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mouse reference genome mm10 (10X Genomics)

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10X Genomics mouse reference genome mm10
Mouse Reference Genome Mm10, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/mouse+mm10+reference+genome/pm42268975-356-7-5
Average 86 stars, based on 1 article reviews

mouse reference genome mm10 - by Bioz Stars, 2026-09

86/100 stars

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Article Title: Integration mapping of cardiac fibroblast single-cell transcriptomes elucidates cellular principles of fibrosis in diverse pathologies
Article Snippet: All mouse data were processed from Fastq files to count matrices using the CellRanger 6.0.2 count program against the mouse mm10 reference genome (2020-A-2.0.0) downloaded from the 10x Genomics website ( https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/what-is-cell-ranger ).

Article Title: A single-cell atlas characterizes dysregulation of the bone marrow immune microenvironment associated with outcomes in multiple myeloma
Article Snippet: To identify the murine sarcoma spike-in cells in the scRNA-seq data, we additionally mapped the raw data to the 2020A combined human (GRCh38) and mouse (mm10) reference genome provided by 10x Genomics using Cell Ranger (version 6.0.1; 10x Genomics) and analyzed the resulting data using Seurat.

Article Title: Intratumoral radiation dose heterogeneity augments antitumor immunity in mice and primes responses to checkpoint blockade
Article Snippet: Reads were aligned to the mouse mm10 reference genome from 10x Genomics.

Article Title: An alternative cell cycle coordinates multiciliated cell differentiation
Article Snippet: The mouse mm10 reference genome was downloaded for analysis and is available from 10x Genomics ( https://www.10xgenomics.com/support/software/cell-ranger/downloads/cr-ref-build-steps#mouse-ref-3-0-0-mm10-vdj ).

Article Title: Image-seq: spatially resolved single-cell sequencing guided by in situ and in vivo imaging.
Article Snippet: The mouse mm10 reference genome was downloaded from 10x Genomics (https:// support.10xgenomics.com/single-cell-gene-expression/software/ downloads/latest?).

Sequencing:

Article Title: Alveolar macrophage-expressed Plet1 is a driver of lung epithelial repair after viral pneumonia.
Article Snippet: .. Sequencing reads were aligned to the mouse mm10 reference genome (refdata-gex-mm102020-A downloaded from 10xGenomics) using STAR solo (2.7.9a) resulting in aUMIcountmatrixwhere cells (barcodes) are columns and rows are genes. ..

Article Title: Alveolar macrophage-expressed Plet1 is a driver of lung epithelial repair after viral pneumonia
Article Snippet: .. Sequencing reads were aligned to the mouse mm10 reference genome (refdata-gex-mm10-2020-A downloaded from 10xGenomics) using STAR solo (2.7.9a) resulting in a UMI count matrix where cells (barcodes) are columns and rows are genes. ..

Software:

Article Title: An alternative cell cycle coordinates multiciliated cell differentiation.
Article Snippet: The canonical mitotic cell cycle coordinates DNA replication, centriole duplication and cytokinesis to generate two cells from one.. Some cells, such as mammalian trophoblast giant cells, use cell cycle variants like the endocycle to bypass mitosis.. Differentiating multiciliated cells, found in the mammalian airway, brain ventricles and reproductive tract, are post-mitotic but generate hundreds of centrioles, each of which matures into a basal body and nucleates a motile cilium.